| Store | Storenumber | Storename | Location | Address | City | Opened | Closed | Storetype | Floorarea | Replaced | ReplacedBy | Previous | Next |
|---|
| Whole Foods Market 10298 | 10298 | Roaring Fork | | 340 Reed Street (Basalt, Colorado) | Basalt, Colorado | 15 August 2012 | | | | | | | |
| Whole Foods Market 10083 | 10083 | Pearl | | 2905 Pearl Street (Boulder, Colorado) | Boulder, Colorado | February 1998 | | | | | | | |
| Whole Foods Market 10301 | 10301 | Baseline | | 2584 Baseline Road (Boulder, Colorado) | Boulder, Colorado | 2007 | | | | | | Wild Oats Market | |
| Whole Foods Market 10785 | 10785 | Boulder Table Mesa | | 695 South Broadway (Boulder, Colorado) | Boulder, Colorado | 24 February 2021 | | | | | | | |
| Whole Foods Market 10423 | 10423 | Ideal Market Boulder | | 1275 Alpine Avenue (Boulder, Colorado) | Boulder, Colorado | 2007 | | | | | | Wild Oats Market | |
| Whole Foods Market 10459 | 10459 | Castle Rock | | 6384 Promenade Parkway (Castle Rock, Colorado) | Castle Rock, Colorado | 29 June 2020 | | | | | | | |
| Whole Foods Market 10273 | 10273 | SouthGlenn | | 6853 South York (Centennial, Colorado) | Centennial, Colorado | 15 June 2009 | | | | | | | |
| Whole Foods Market 10435 | 10435 | New Center Point | | 3180 New Center Point (Colorado Springs, Colorado) | Colorado Springs, Colorado | 2007 | | | | | | Wild Oats Market | |
| Whole Foods Market 10146 | 10146 | Pikes Peak | | 7635 North Academy Boulevard (Colorado Springs, Colorado) | Colorado Springs, Colorado | 3 March 2004 | | | | | | | |
| Whole Foods Market 10373 | 10373 | Washington Park | | 1111 South Washington Street (Denver, Colorado) | Denver, Colorado | 2007 | | | | | | Wild Oats Market | |
| Whole Foods Market 10626 | 10626 | Union Station | | 1701 Wewatta Street (Denver, Colorado) | Denver, Colorado | 15 November 2017 | | | | | | | |
| Whole Foods Market 10746 | 10746 | Ideal Market Denver | | 900 East 11th Avenue (Denver, Colorado) | Denver, Colorado | 7 October 2020 | | | | | | | |
| Whole Foods Market 10405 | 10405 | Capitol Hill | | 900 East 11th Avenue (Denver, Colorado) | Denver, Colorado | 2007 | | | | | | Wild Oats Market | |
| Whole Foods Market 10095 | 10095 | Cherry Creek | | 2375 East 1st Avenue (Denver, Colorado) | Denver, Colorado | 1 November 2000 | | | | | | | |
| Whole Foods Market 10207 | 10207 | Tamarac | | 7400 East Hampden Avenue (Denver, Colorado) | Denver, Colorado | September 2005 | | | | | | | |
| Whole Foods Market 10147 | 10147 | Fort Collins | | 2201 South College Avenue (Fort Collins, Colorado) | Fort Collins, Colorado | 23 June 2004 | | | | | | | |
| Whole Foods Market 10470 | 10470 | Frisco | | 261 Lusher Court (Frisco, Colorado) | Frisco, Colorado | 29 April 2014 | | | | | | | |
| Whole Foods Market 10331 | 10331 | Colorado Blvd | | 870 South Colorado Boulevard (Glendale, Colorado) | Glendale, Colorado | 2007 | | | | | | Wild Oats Market | |
| Whole Foods Market 10350 | 10350 | Colfax | | 14357 West Colfax Avenue (Golden, Colorado) | Golden, Colorado | 2007 | | | | | | Wild Oats Market | |
| Whole Foods Market 10142 | 10142 | Highlands Ranch | | 9366 South Colorado Boulevard (Highlands Ranch, Colorado) | Highlands Ranch, Colorado | 2002 | | | | | | | |
| Whole Foods Market 10218 | 10218 | Belmar | | 444 South Wadsworth Boulevard (Lakewood, Colorado) | Lakewood, Colorado | 7 December 2005 | | | | | | | |
| Whole Foods Market 10471 | 10471 | Governor's Ranch | | 5155 South Wadsworth Boulevard (Littleton, Colorado) | Littleton, Colorado | 19 December 2012 | | | | | | | |
| Whole Foods Market 10554 | 10554 | Longmont | | 1250 South Hover Road (Longmont, Colorado) | Longmont, Colorado | 14 December 2016 | | | | | | | |
| Whole Foods Market 10445 | 10445 | Superior | | 303 Marshall Road (Superior, Colorado) | Superior, Colorado | 2007 | | | | | | Wild Oats Market | |
| Whole Foods Market 10556 | 10556 | Bradburn | | 4451 Main Street (Westminster, Colorado) | Westminster, Colorado | 9 December 2014 | | | | | | | |
| Whole Foods Market 10394 | 10394 | Westminster | | 9229 North Sheridan Boulevard (Westminster, Colorado) | Westminster, Colorado | 2007 | | | | | | Wild Oats Market | |